Mgr. Naděžda Špačková, Ph.D.

2018

• Protein environment affects the water-tryptophan binding mode. MD, QM/MM, and NMR studies of engrailed homeodomain mutants

  ŠPAČKOVÁ Naděžda TROŠANOVÁ Zuzana SEBESTA F. JANSEN Séverine BURDA J.V. SRB Pavel ZACHRDLA Milan ŽÍDEK Lukáš KOZELKA Jiří

  Article in Periodical

  Physical Chemistry Chemical Physics, year: 2018, volume: 20, edition: 18, DOI

• Role of Inosine-Uracil Base Pairs in the Canonical RNA Duplexes

  ŠPAČKOVÁ Naděžda RÉBLOVÁ Kamila

  Article in Periodical

  GENES, year: 2018, volume: 9, edition: 7, DOI

2017

• DNA mutation motifs in the genes associated with inherited diseases

  RŮŽIČKA Michal KULHÁNEK Petr RADOVÁ Lenka ČECHOVÁ Andrea ŠPAČKOVÁ Naděžda FAJKUSOVÁ Lenka RÉBLOVÁ Kamila

  Article in Periodical

  Plos one, year: 2017, volume: 12, edition: 8, DOI

2016

• Analysis of intrinsic properties of mutation motifs (coldspots-hotspots) in genes associated with inherited disorders using molecular dynamics methods

  RÉBLOVÁ Kamila RADOVÁ Lenka ČECHOVÁ Andrea RŮŽIČKA Michal ŠPAČKOVÁ Naděžda KULHÁNEK Petr FAJKUSOVÁ Lenka

  Conference abstract

  Year: 2016, type: Conference abstract

• Effect of a modified base on stability and flexibility of RNA duplexes: molecular dynamics and thermodynamics study.

  ŠPAČKOVÁ Naděžda RÉBLOVÁ Kamila

  Conference abstract

  Year: 2016, type: Conference abstract

2014

• Mechanical Model of DNA Allostery

  DRŠATA Tomáš ZGARBOVÁ Marie ŠPAČKOVÁ Naděžda JUREČKA Petr ŠPONER Jiří LANKAŠ Filip

  Article in Periodical

  Journal of Physical Chemistry Letters, year: 2014, volume: 5, edition: 21, DOI

2013

• Relative Stability of Different DNA Guanine Quadruplex Stem Topologies Derived Using Large-Scale Quantum-Chemical Computations

  ŠPONER Jiří MLÁDEK Arnošt ŠPAČKOVÁ Naděžda CANG Xiaohui H. CHEATHAM Thomas E. GRIMME Stefan

  Article in Periodical

  Journal of the American Chemical Society, year: 2013, volume: 135, edition: 26, DOI

2011

• A-Minor Tertiary Interactions in RNA Kink-Turns. Molecular Dynamics and Quantum Chemical Analysis

  RÉBLOVÁ Kamila ŠPONEROVÁ Judit ŠPAČKOVÁ Naděžda BEŠŠEOVÁ Ivana ŠPONER Jiří

  Article in Periodical

  JOURNAL OF PHYSICAL CHEMISTRY B, year: 2011, volume: 115, edition: 47, DOI

• NMR cross-­correlated relaxation rates reveal ion coordination sites in DNA

  FIALA Radovan ŠPAČKOVÁ Naděžda FOLDYNOVÁ-TRANTÍRKOVÁ Silvie ŠPONER Jiří SKLENÁŘ Vladimír TRANTÍREK Lukáš

  Article in Periodical

  Journal of the American Chemical Society, year: 2011, volume: 133, edition: 35, DOI

2007

• Human telomeric G-DNA - a test example for force field adjustment

  FADRNÁ Eva ŠPAČKOVÁ Naděžda SVOZIL Daniel ŠPONER Jiří KOČA Jaroslav

  Article in Proceedings

  Journal Of Biomolecular Structure and Dynamics, year: 2007