prof. RNDr. Jiří Šponer, DrSc.

2013

• Effect of Guanine to Inosine Substitution on Stability of Canonical DNA and RNA Duplexes: Molecular Dynamics Thermodynamics Integration Study

  KREPL Miroslav OTYEPKA Michal BANÁŠ Pavel ŠPONER Jiří

  Article in Periodical

  JOURNAL OF PHYSICAL CHEMISTRY B, year: 2013, volume: 117, edition: 6, DOI

• How to understand quantum chemical computations on DNA and RNA systems? A practical guide for non-specialists

  ŠPONER Jiří ŠPONEROVÁ Judit MLÁDEK Arnošt BANÁŠ Pavel JURECKA Petr OTYEPKA Michal

  Article in Periodical

  Methods, year: 2013, volume: 64, edition: 1, DOI

• Isosteric and Nonisosteric Base Pairs in RNA Motifs: Molecular Dynamics and Bioinformatics Study of the Sarcin-Ricin Internal Loop

  HAVRILA Marek RÉBLOVÁ Kamila ZIRBEL C. LEONTIS Neocles B. ŠPONER Jiří

  Article in Periodical

  Journal of Physical Chemistry B, year: 2013, volume: 117, edition: 46, DOI

• Nature and Magnitude of Aromatic Base Stacking in DNA and RNA: Quantum Chemistry, Molecular Mechanics, and Experiment

  ŠPONER Jiří ŠPONEROVÁ Judit MLÁDEK Arnošt JURECKA Petr BANÁŠ Pavel OTYEPKA Michal

  Article in Periodical

  Biopolymers, year: 2013, volume: 99, edition: 12, DOI

• Photochemistry of 2-Aminooxazole, a Hypothetical Prebiotic Precursor of RNA Nucleotides

  SZABLA Rafal Kazimierz TUNA Deniz GORA Robert W ŠPONER Jiří SOBOLEWSKI Andrzej L DOMCKE Wolfgang

  Article in Periodical

  Journal of Physical Chemistry Letters, year: 2013, volume: 4, edition: 16, DOI

• Relative Stability of Different DNA Guanine Quadruplex Stem Topologies Derived Using Large-Scale Quantum-Chemical Computations

  ŠPONER Jiří MLÁDEK Arnošt ŠPAČKOVÁ Naděžda CANG Xiaohui H. CHEATHAM Thomas E. GRIMME Stefan

  Article in Periodical

  Journal of the American Chemical Society, year: 2013, volume: 135, edition: 26, DOI

• Ribozyme Activity of RNA Nonenzymatically Polymerized from 3 ',5 '-Cyclic GMP

  PINO Samanta COSTANZO Giovanna GIORGI Alessandra ŠPONER Jiří ŠPONEROVÁ Judit DI MAURO Ernesto

  Article in Periodical

  Entropy, year: 2013, volume: 15, edition: 12, DOI

• Structural and energetic factors controlling the enantioselectivity of dinucleotide formation under prebiotic conditions

  ŠPONEROVÁ Judit MLÁDEK Arnošt ŠPONER Jiří

  Article in Periodical

  Physical Chemistry Chemical Physics, year: 2013, volume: 15, edition: 17, DOI

• Structural dynamics of possible late-stage intermediates in folding of quadruplex DNA studied by molecular simulations

  STADLBAUER Petr KREPL Miroslav CHEATHAM Thomas E. KOČA Jaroslav ŠPONER Jiří

  Article in Periodical

  Nucleic Acids Research, year: 2013, volume: 41, edition: 14, DOI

• Structure, Stiffness and Substates of the Dickerson-Drew Dodecamer

  DRŠATA Tomáš PEREZ Alberto OROZCO Modesto MOROZOV Alexandre V ŠPONER Jiří LANKAŠ Filip

  Article in Periodical

  Journal of Chemical Theory and Computation, year: 2013, volume: 9, edition: 1, DOI