prof. RNDr. Jiří Šponer, DrSc.
Professor, National Centre for Biomolecular Research
correspondence Address:
Kotlářská 267/2, 611 37 Brno
e‑mail: |
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Total number of publications: 210
2012
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Molecular Dynamics Simulations of RNA Molecules
Innovations in Biomolecular Modeling and Simulations, edition: 1. vydání, year: 2012, number of pages: 27 s.
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Molecular Mechanism of preQ(1) Riboswitch Action: A Molecular Dynamics Study
Journal of Physical Chemistry B, year: 2012, volume: 116, edition: 42, DOI
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On the Road from Formamide Ices to Nucleobases: IR-Spectroscopic Observation of a Direct Reaction between Cyano Radicals and Formamide in a High-Energy Impact Event
Journal of the American Chemical Society, year: 2012, volume: 134, edition: 51, DOI
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Reference Simulations of Noncanonical Nucleic Acids with Different chi Variants of the AMBER Force Field: Quadruplex DNA, Quadruplex RNA, and Z-DNA
Journal of Chemical Theory and Computation, year: 2012, volume: 8, edition: 7, DOI
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Simulations of A-RNA Duplexes. The Effect of Sequence, Solute Force Field, Water Model, and Salt Concentration
Journal of Physical Chemistry B, year: 2012, volume: 116, edition: 33, DOI
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Structure and mechanical properties of the ribosomal L1 stalk three-way junction
Nucleic Acids Research, year: 2012, volume: 40, edition: 13, DOI
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The DNA and RNA sugar–phosphate backbone emerges as the key player. An overview of quantum-chemical, structural biology and simulation studies
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, year: 2012, volume: 14, edition: 44, DOI
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Understanding the role of base stacking in nucleic acids. MD and QM analysis of tandem GA base pairs in RNA duplexes
Physical Chemistry Chemical Physics, year: 2012, volume: 14, edition: 36, DOI
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Understanding the Sequence Preference of Recurrent RNA Building Blocks using Quantum Chemistry: The Intrastrand RNA Dinucleotide Platform
Journal of Chemical Theory and Computation, year: 2012, volume: 8, edition: 1, DOI
2011
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A-Minor Tertiary Interactions in RNA Kink-Turns. Molecular Dynamics and Quantum Chemical Analysis
JOURNAL OF PHYSICAL CHEMISTRY B, year: 2011, volume: 115, edition: 47, DOI