prof. RNDr. Jiří Šponer, DrSc.

2004

• Molecular dynamics simulations of guanine quadruplex loops:Advances and force field limitations

  FADRNÁ Eva ŠPAČKOVÁ Naděžda ŠTEFL Richard KOČA Jaroslav CHEATHAM Thomas E. ŠPONER Jiří

  Article in Periodical

  Biophysical Journal, year: 2004, volume: 87, edition: 1

• Molekulově Dynamická simulace flexibilních RNA motivů

  RÁZGA Filip KOČA Jaroslav ŠPONER Jiří LEONTIS Neocles B.

  Article in Proceedings

  Sborník abstraktů Studentská vědecká konference v oboru chemie a biochemie, year: 2004

• Ribosomal RNA Kink-turn Motif - A Flexible Molecular Hinge

  RÁZGA Filip ŠPAČKOVÁ Naďa RÉBLOVÁ Kamila KOČA Jaroslav LEONTIS Neocles B. ŠPONER Jiří

  Article in Periodical

  Journal of Biomolecular Structure & Dynamics, year: 2004, volume: 22, edition: 2

• Ribosomal RNA Kink-turn motif - a flexible molecular hinge

  RÁZGA Filip ŠPAČKOVÁ Naděžda RÉBLOVÁ Kamila KOČA Jaroslav LEONTIS Neocles B. ŠPONER Jiří

  Article in Proceedings

  Conference on Current Trends in Computational Chemistry, year: 2004

2003

• Conformational Flexibility of DNA sequences studied by Advanced Molecular Mechanics and Dynamics Tools

  FADRNÁ Eva ŠPAČKOVÁ Naděžda ŠPONER Jiří KOČA Jaroslav

  Article in Proceedings

  Book of Abstracts, year: 2003

• Formation Pathways of a Guanine-Quadruplex DNA Revealed by Molecular Dynamics and Thermodynamics Analysis of the Substates

  ŠTEFL Richard CHEATHAM Thomas E. ŠPAČKOVÁ Naděžda FADRNÁ Eva BERGER Imre KOČA Jaroslav ŠPONER Jiří

  Article in Periodical

  Biophysical Journal, year: 2003, volume: 85, edition: 3

• Molecular Dynamics of Guanine Quadruplex Molecules

  ŠPAČKOVÁ Naděžda ŠTEFL Richard BERGER Imre FADRNÁ Eva KOČA Jaroslav CHEATHAM III T.E. ŠPONER Jiří

  Article in Proceedings

  Book of Abstracts, year: 2003

• Molecular dynamics simulations of RNA kissing loop motifs reveal structural dynamics and formation of cation-binding pockets

  RÉBLOVÁ Kamila ŠPAČKOVÁ Naděžda ŠPONER Judit KOČA Jaroslav ŠPONER Jiři

  Article in Periodical

  Nucleic Acids Research, year: 2003, volume: 31, edition: 23

• Non-Watson-Crick Base Pairing and Hydration in RNA motifs: Molecular Dynamics of 5S rRNA Loop E

  RÉBLOVÁ Kamila ŠPAČKOVÁ Naděžda KOČA Jaroslav LEONTIS Neocles ŠPONER Jiří

  Article in Proceedings

  Journal of Biomolecular Structure and Dynamics, year: 2003

• Non-Watson-Crick Basepairing and Hydration in RNA Motifs:

  RÉBLOVÁ Kamila SPACKOVÁ Nadezda STEFL Richard CSASZAR Kristina KOCA Jaroslav LEONTIS Neocles SPONER Jiri

  Article in Periodical

  Biophysical Journal, year: 2003, volume: 84, edition: 6