prof. RNDr. Jiří Šponer, DrSc.
Professor, National Centre for Biomolecular Research
correspondence Address:
Kotlářská 267/2, 611 37 Brno
e‑mail: |
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Total number of publications: 210
2015
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Extended molecular dynamics of a c-kit promoter quadruplex
Nucleic Acids Research, year: 2015, volume: 43, edition: 18, DOI
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Hairpins participating in folding of human telomeric sequence quadruplexes studied by standard and T-REMD simulations
Nucleic Acids Research, year: 2015, volume: 43, edition: 20, DOI
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High-energy chemistry of formamide: A unified mechanism of nucleobase formation
Proceedings of the National Academy of Sciences of the United States of America, year: 2015, volume: 112, edition: 3, DOI
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Chemical Feasibility of the General Acid/Base Mechanism of glmS Ribozyme Self-Cleavage
Biopolymers, year: 2015, volume: 103, edition: 10, DOI
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Insights from 10 μs-scale molecular dynamics simulations of human telomeric quadruplexes
Year: 2015, type: Conference abstract
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Insights into Stability and Folding of GNRA and UNCG Tetra loops Revealed by Microsecond Molecular Dynamics and Well-Tempered Metadynamics
Journal of Chemical Theory and Computation, year: 2015, volume: 11, edition: 8, DOI
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Intermediates in Folding of Human Telomeric Quadruplexes Studied by Molecular Dynamics Simulations
Year: 2015, type: Conference abstract
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Microsecond-Scale MD Simulations of HIV-1 DIS Kissing-Loop Complexes Predict Bulged-In Conformation of the Bulged Bases and Reveal Interesting Differences between Available Variants of the AMBER RNA Force Fields
Journal of Physical Chemistry B, year: 2015, volume: 119, edition: 49, DOI
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Molecular dynamic simulations of protein/RNA complexes: CRISPR/Csy4 endoribonuclease
BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS, year: 2015, volume: 1850, edition: 5, DOI
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Quantum Chemical Benchmark Study on 46 RNA Backbone Families Using a Dinucleotide Unit
Journal of Chemical Theory and Computation, year: 2015, volume: 11, edition: 10, DOI